| Author: |
Richard H. Baltz, Julian E. Davies & Arnold L. Demain
|
| Release at: | 2010 |
| Pages: | 786 |
| Edition: |
Third Edition
|
| File Size: | 45 MB |
| File Type: | |
| Language: | English |
Description of Manual of Industrial Microbiology and Biotechnology
Industrial microorganisms have contributed enormously to the pharmaceutical, food, beverage, and chemical industries in the past, and are rapidly advancing in the production of renewable energy; they have been central in the development of an ever expanding field of biotechnology.
It is hard to imagine what life would be like without the fruits of industrial microbes. Some aspects of industrial microbiology have not changed much over the years. The production of fine wines has been refined and perfected, and there is probably not much yet to be learned by studying the molecular biology of the specific yeast cultivars. Chemical mutagens still work just as they did when the first volume of Manual of Industrial Microbiology and Biotechnology (MIMB) was published in 1986, and they still provide powerful empirical approaches for strain improvement.
However, most of the methodologies that can be applied to industrial microbes and biotechnology have advanced dramatically, even since the second volume of MIMB was published in 1998. It is because of these advances that it is now important to provide the scientific community, including academic and industrial scientists and science administrators, an updated and totally new 3rd edition of MIMB.
Content of Manual of Industrial Microbiology and Biotechnology
SECTION I
ISOLATION AND SCREENING FOR SECONDARY METABOLITES AND
ENZYMES / 1
VOLUME EDITOR: J. E. DAVIES
SECTION EDITOR: A. T. BULL
Isolation
1. New Approaches to Microbial
Isolation / 3
SLAVA S. EPSTEIN, KIM LEWIS, DOMINICA NICHOLS, AND EKATERINA GAVRISH
2. Selecti e Isolation of Actinobacteria / 13
MICHAEL GOODFELLOW
Identity / Dereplication
3. Taxonomic Characterization of
Prokaryotic Microorganisms / 28
GIOVANNA E. FELIS, SANDRA TORRIANI,
JOHAN E. T. VAN HyLCKAMA VLIEG, AND
AHARON OREN
Screening
4. Enzymes from Extreme En ironments / 43
DON A. COWAN, BRONWyN M. KIRBy,
TRACy L. MEIRING, MANUEL FERRER,
MARIA-EUGENIA GUAzzARONI,
OLGA V. GOLySHINA, AND PETER N. GOLySHIN
5. Cell-Based Screening Methods for
Anti-Infecti e Compounds / 62
STEFANO DONADIO AND MARGHERITA SOSIO
6. Metabolomics for the Disco ery of No el
Compounds / 73
JENS C. FRISVAD
7. Methods To Access Silent Biosynthetic
Pathways / 78
ROBERT H. CICHEWICz, JON C. HENRIKSON, XIAORU WANG, AND KATIE M. BRANSCUM
SECTION II
FERMENTATION AND CELL CULTURE / 97
VOLUME EDITOR: A. L. DEMAIN
SECTION EDITOR: P. MASUREKAR
8. Miniaturization of Fermentations / 99
WOUTER A. DUETz, MATTHEW CHASE,
AND GERALD BILLS
9. Solid-Phase Fermentation: Aerobic and
Anaerobic / 117
RAMUNAS BIGELIS
10. Bacterial Culti ation for Production of
Proteins and Other Biological Products / 132
JOSEPH SHILOACH AND URSULA RINAS
11. Heterologous Protein Expression in Yeasts and Filamentous Fungi / 145
NINGyAN zHANG AND zHIQIANG AN
12. Mammalian Cell Culture for
Biopharmaceutical Production / 157
JINyOU zHANG
13. Manufacture of Mammalian Cell
Biopharmaceuticals / 179
JINyOU zHANG
14. Plant Cell Culture / 196
NANCy L. PAIVA
15. Insect Cell Culture / 212
SPIROS N. AGATHOS
SECTION III
GENETICS, STRAIN IMPROVEMENT, AND
RECOMBINANT PROTEINS / 223
VOLUME EDITOR: R. H. BALTZ
SECTION EDITOR: C. D. REEVES
16. Genetic Engineering of
Corynebacteria / 225
MASATO IKEDA AND SEIKI TAKENO
17. Genetic Manipulation of
Clostridium / 238
MARITE BRADSHAW AND ERIC A. JOHNSON
18. Genetic Manipulation of
Myxobacteria / 262
WESLEy P. BLACK, BRyAN JULIEN,
EDUARDO RODRIGUEz, AND zHAOMIN yANG
19. Strain Impro ement of Escherichia coli To Enhance Recombinant Protein Production / 273
MICHAEL E. PyNE, KARAN S. SUKHIJA,
AND C. PERRy CHOU
20. Genetic Engineering Tools for
Saccharomyces cerevisiae / 287
VERENA SIEWERS, UFFE H. MORTENSEN,
AND JENS NIELSEN
21. Protein Expression in Noncon entional
Yeasts / 302
THOMAS W. JEFFRIES AND JAMES M. CREGG
22. Genetics, Genetic Manipulation, and
Approaches to Strain Impro ement of
Filamentous Fungi / 318
VERA MEyER, ARTHUR F. J. RAM,
AND PETER J. PUNT
23. Genetic Manipulations of Mammalian
Cells for Protein Expression / 330
ANNE KANTARDJIEFF, WEI-SHOU HU, GARGI SETH,
AND R. SCOTT McIVOR
SECTION IV
GENETIC ENGINEERING OF SECONDARY
METABOLITE SYNTHESIS / 345
VOLUME EDITOR: R. H. BALTZ
SECTION EDITOR: L. KATZ
24. Glycosylation of Secondary Metabolites To Produce No el Compounds / 347
ANDREAS BECHTHOLD AND KATHARINA PROBST
25. Metabolic Engineering of
Escherichia coli for the Production of a
Precursor to Artemisinin, an Antimalarial
Drug / 364
CHRISTOPHER J. PETzOLD AND JAy D. KEASLING
26. Heterologous Production of
Polyketides in Streptomyces coelicolor and Escherichia coli / 380
JAMES T. KEALEy
27. Genetic Engineering of Acidic
Lipopeptide Antibiotics / 391
RICHARD H. BALTz, KIEN T. NGUyEN,
AND DyLAN C. ALEXANDER
28. Genetic Engineering To Regulate
Production of Secondary Metabolites in
Streptomyces / 411
SUSAN E. JENSEN
29. Genetic Engineering of Myxobacterial
Natural Product Biosynthetic Genes / 426
BRyAN JULIEN AND EDUARDO RODRIGUEz
SECTION V
INDUSTRIAL ENZYMES, BIOCATALYSIS, AND ENZYME EVOLUTION / 439
VOLUME EDITOR: J. E. DAVIES
SECTION EDITOR: H. ZHAO
30. Tools for Enzyme Disco ery / 441
yASUHISA ASANO
31. Enzyme Engineering: Combining
Computational Approaches with Directed
E olution / 453
LOUIS A. CLARK
32. Enzyme Engineering by Directed
E olution / 466
MANFRED T. REETz
33. Industrial Applications of Enzymes as
Catalysts / 480
NIKHIL U. NAIR, WENG LIN TANG,
DAWN T. ERIKSEN, AND HUIMIN zHAO
34. Biomass-Con erting Enzymes and
Their Bioenergy Applications / 495
FENG XU
35. The Use of Enzymes for Non-Aqueous
Organic Transformations / 509
ELTON P. HUDSON, MICHAEL J. LISzKA, AND DOUGLAS S. CLARK
36. Enzyme Promiscuity and E olution of
New Protein Functions / 524
BERT VAN LOO AND FLORIAN HOLLFELDER
37. Enzyme Production in Escherichia
coli / 539
DANIEL J. SAyUT, PAVAN K. R. KAMBAM,
WILLIAM G. HERRICK, AND LIANHONG SUN
38. Bioprocess De elopment / 549
LUTz HILTERHAUS AND ANDREAS LIESE
SECTION VI
MICROBIAL FUELS (BIOFUELS) AND FINE
CHEMICALS / 563
VOLUME EDITOR: A. L. DEMAIN
SECTION EDITOR: L. R. LYND
39. Accessing Microbial Communities for
Solutions to Biofuels Production / 565
CARL B. ABULENCIA, STEVEN M. WELLS,
KEVIN A. GRAy, MARTIN KELLER, AND
JOEL A. KREPS
40. Micro-Algal Culture as a Feedstock for
Bioenergy, Chemicals, and Nutrition / 577
SUSAN T. L. HARRISON, MELINDA J. GRIFFITHS, NICHOLAS LANGLEy, CARyN VENGADAJELLUM, AND ROBERT P. VAN HILLE
41. Metabolic Engineering Strategies for
Production of Commodity and Fine Chemicals: Escherichia coli as a Platform Organism / 591
PATRICK C. CIRINO
42. Impro ing Microbial Robustness Using
Systems Biology / 605
JONATHAN R. MIELENz AND DAVID A. HOGSETT
43. Bioethanol Production from
Lignocellulosics: Some Process Considerations and Procedures / 621
CHARLES A. ABBAS, WU LI BAO, KyLE E. BEERy,
PAMELA CORRINGTON, CONSUELO CRUz, LUCAS
LOVELESS, MARTIN SPARKS, AND KELLI TREI
44. Surface Microbiology of Cellulolytic
Bacteria / 634
ALEXANDRU DUMITRACHE, GIDEON M. WOLFAARDT,
AND LEE R. LyND
45. Physiological and Methodological Aspects
of Cellulolytic Microbial Cultures / 644
NICOLAI S. PANIKOV AND LEE R. LyND
SECTION VII
BIOLOGICAL ENGINEERING AND SCALE-UP OF INDUSTRIAL PROCESSES / 657
VOLUME EDITOR: A. L. DEMAIN
SECTION EDITOR: B. JUNKER
46. Raw Materials Selection and Medium
De elopment for Industrial Fermentation
Processes / 659
SAMUN K. DAHOD, RANDOLPH GREASHAM, AND MAX KENNEDy
47. Scale-Up of Microbial Fermentation
Process / 669
XIAOMING yANG
48. Cell Culture Bioreactors: Controls,
Measurements, and Scale-Down Model / 676
WAN-SEOP KIM
49. Continuous Culture / 685
AN-PING zENG AND JIBIN SUN
50. Ad ances in Sensor and Sampling
Technologies in Fermentation and Mammalian Cell Culture / 700
ADEyMA y. ARROyO
51. Bioreactor Automation / 719
DAVID HOPKINS, MELISSA ST. AMAND,
AND JACK PRIOR
52. Purification and Characterization of
Proteins / 731
ULRICH STRyCH AND RICHARD C. WILLSON
Author Index / 743
Subject Index / 745
ISOLATION AND SCREENING FOR SECONDARY METABOLITES AND
ENZYMES / 1
VOLUME EDITOR: J. E. DAVIES
SECTION EDITOR: A. T. BULL
Isolation
1. New Approaches to Microbial
Isolation / 3
SLAVA S. EPSTEIN, KIM LEWIS, DOMINICA NICHOLS, AND EKATERINA GAVRISH
2. Selecti e Isolation of Actinobacteria / 13
MICHAEL GOODFELLOW
Identity / Dereplication
3. Taxonomic Characterization of
Prokaryotic Microorganisms / 28
GIOVANNA E. FELIS, SANDRA TORRIANI,
JOHAN E. T. VAN HyLCKAMA VLIEG, AND
AHARON OREN
Screening
4. Enzymes from Extreme En ironments / 43
DON A. COWAN, BRONWyN M. KIRBy,
TRACy L. MEIRING, MANUEL FERRER,
MARIA-EUGENIA GUAzzARONI,
OLGA V. GOLySHINA, AND PETER N. GOLySHIN
5. Cell-Based Screening Methods for
Anti-Infecti e Compounds / 62
STEFANO DONADIO AND MARGHERITA SOSIO
6. Metabolomics for the Disco ery of No el
Compounds / 73
JENS C. FRISVAD
7. Methods To Access Silent Biosynthetic
Pathways / 78
ROBERT H. CICHEWICz, JON C. HENRIKSON, XIAORU WANG, AND KATIE M. BRANSCUM
SECTION II
FERMENTATION AND CELL CULTURE / 97
VOLUME EDITOR: A. L. DEMAIN
SECTION EDITOR: P. MASUREKAR
8. Miniaturization of Fermentations / 99
WOUTER A. DUETz, MATTHEW CHASE,
AND GERALD BILLS
9. Solid-Phase Fermentation: Aerobic and
Anaerobic / 117
RAMUNAS BIGELIS
10. Bacterial Culti ation for Production of
Proteins and Other Biological Products / 132
JOSEPH SHILOACH AND URSULA RINAS
11. Heterologous Protein Expression in Yeasts and Filamentous Fungi / 145
NINGyAN zHANG AND zHIQIANG AN
12. Mammalian Cell Culture for
Biopharmaceutical Production / 157
JINyOU zHANG
13. Manufacture of Mammalian Cell
Biopharmaceuticals / 179
JINyOU zHANG
14. Plant Cell Culture / 196
NANCy L. PAIVA
15. Insect Cell Culture / 212
SPIROS N. AGATHOS
SECTION III
GENETICS, STRAIN IMPROVEMENT, AND
RECOMBINANT PROTEINS / 223
VOLUME EDITOR: R. H. BALTZ
SECTION EDITOR: C. D. REEVES
16. Genetic Engineering of
Corynebacteria / 225
MASATO IKEDA AND SEIKI TAKENO
17. Genetic Manipulation of
Clostridium / 238
MARITE BRADSHAW AND ERIC A. JOHNSON
18. Genetic Manipulation of
Myxobacteria / 262
WESLEy P. BLACK, BRyAN JULIEN,
EDUARDO RODRIGUEz, AND zHAOMIN yANG
19. Strain Impro ement of Escherichia coli To Enhance Recombinant Protein Production / 273
MICHAEL E. PyNE, KARAN S. SUKHIJA,
AND C. PERRy CHOU
20. Genetic Engineering Tools for
Saccharomyces cerevisiae / 287
VERENA SIEWERS, UFFE H. MORTENSEN,
AND JENS NIELSEN
21. Protein Expression in Noncon entional
Yeasts / 302
THOMAS W. JEFFRIES AND JAMES M. CREGG
22. Genetics, Genetic Manipulation, and
Approaches to Strain Impro ement of
Filamentous Fungi / 318
VERA MEyER, ARTHUR F. J. RAM,
AND PETER J. PUNT
23. Genetic Manipulations of Mammalian
Cells for Protein Expression / 330
ANNE KANTARDJIEFF, WEI-SHOU HU, GARGI SETH,
AND R. SCOTT McIVOR
SECTION IV
GENETIC ENGINEERING OF SECONDARY
METABOLITE SYNTHESIS / 345
VOLUME EDITOR: R. H. BALTZ
SECTION EDITOR: L. KATZ
24. Glycosylation of Secondary Metabolites To Produce No el Compounds / 347
ANDREAS BECHTHOLD AND KATHARINA PROBST
25. Metabolic Engineering of
Escherichia coli for the Production of a
Precursor to Artemisinin, an Antimalarial
Drug / 364
CHRISTOPHER J. PETzOLD AND JAy D. KEASLING
26. Heterologous Production of
Polyketides in Streptomyces coelicolor and Escherichia coli / 380
JAMES T. KEALEy
27. Genetic Engineering of Acidic
Lipopeptide Antibiotics / 391
RICHARD H. BALTz, KIEN T. NGUyEN,
AND DyLAN C. ALEXANDER
28. Genetic Engineering To Regulate
Production of Secondary Metabolites in
Streptomyces / 411
SUSAN E. JENSEN
29. Genetic Engineering of Myxobacterial
Natural Product Biosynthetic Genes / 426
BRyAN JULIEN AND EDUARDO RODRIGUEz
SECTION V
INDUSTRIAL ENZYMES, BIOCATALYSIS, AND ENZYME EVOLUTION / 439
VOLUME EDITOR: J. E. DAVIES
SECTION EDITOR: H. ZHAO
30. Tools for Enzyme Disco ery / 441
yASUHISA ASANO
31. Enzyme Engineering: Combining
Computational Approaches with Directed
E olution / 453
LOUIS A. CLARK
32. Enzyme Engineering by Directed
E olution / 466
MANFRED T. REETz
33. Industrial Applications of Enzymes as
Catalysts / 480
NIKHIL U. NAIR, WENG LIN TANG,
DAWN T. ERIKSEN, AND HUIMIN zHAO
34. Biomass-Con erting Enzymes and
Their Bioenergy Applications / 495
FENG XU
35. The Use of Enzymes for Non-Aqueous
Organic Transformations / 509
ELTON P. HUDSON, MICHAEL J. LISzKA, AND DOUGLAS S. CLARK
36. Enzyme Promiscuity and E olution of
New Protein Functions / 524
BERT VAN LOO AND FLORIAN HOLLFELDER
37. Enzyme Production in Escherichia
coli / 539
DANIEL J. SAyUT, PAVAN K. R. KAMBAM,
WILLIAM G. HERRICK, AND LIANHONG SUN
38. Bioprocess De elopment / 549
LUTz HILTERHAUS AND ANDREAS LIESE
SECTION VI
MICROBIAL FUELS (BIOFUELS) AND FINE
CHEMICALS / 563
VOLUME EDITOR: A. L. DEMAIN
SECTION EDITOR: L. R. LYND
39. Accessing Microbial Communities for
Solutions to Biofuels Production / 565
CARL B. ABULENCIA, STEVEN M. WELLS,
KEVIN A. GRAy, MARTIN KELLER, AND
JOEL A. KREPS
40. Micro-Algal Culture as a Feedstock for
Bioenergy, Chemicals, and Nutrition / 577
SUSAN T. L. HARRISON, MELINDA J. GRIFFITHS, NICHOLAS LANGLEy, CARyN VENGADAJELLUM, AND ROBERT P. VAN HILLE
41. Metabolic Engineering Strategies for
Production of Commodity and Fine Chemicals: Escherichia coli as a Platform Organism / 591
PATRICK C. CIRINO
42. Impro ing Microbial Robustness Using
Systems Biology / 605
JONATHAN R. MIELENz AND DAVID A. HOGSETT
43. Bioethanol Production from
Lignocellulosics: Some Process Considerations and Procedures / 621
CHARLES A. ABBAS, WU LI BAO, KyLE E. BEERy,
PAMELA CORRINGTON, CONSUELO CRUz, LUCAS
LOVELESS, MARTIN SPARKS, AND KELLI TREI
44. Surface Microbiology of Cellulolytic
Bacteria / 634
ALEXANDRU DUMITRACHE, GIDEON M. WOLFAARDT,
AND LEE R. LyND
45. Physiological and Methodological Aspects
of Cellulolytic Microbial Cultures / 644
NICOLAI S. PANIKOV AND LEE R. LyND
SECTION VII
BIOLOGICAL ENGINEERING AND SCALE-UP OF INDUSTRIAL PROCESSES / 657
VOLUME EDITOR: A. L. DEMAIN
SECTION EDITOR: B. JUNKER
46. Raw Materials Selection and Medium
De elopment for Industrial Fermentation
Processes / 659
SAMUN K. DAHOD, RANDOLPH GREASHAM, AND MAX KENNEDy
47. Scale-Up of Microbial Fermentation
Process / 669
XIAOMING yANG
48. Cell Culture Bioreactors: Controls,
Measurements, and Scale-Down Model / 676
WAN-SEOP KIM
49. Continuous Culture / 685
AN-PING zENG AND JIBIN SUN
50. Ad ances in Sensor and Sampling
Technologies in Fermentation and Mammalian Cell Culture / 700
ADEyMA y. ARROyO
51. Bioreactor Automation / 719
DAVID HOPKINS, MELISSA ST. AMAND,
AND JACK PRIOR
52. Purification and Characterization of
Proteins / 731
ULRICH STRyCH AND RICHARD C. WILLSON
Author Index / 743
Subject Index / 745
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